PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g01860.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 385aa    MW: 42517.4 Da    PI: 7.2854
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g01860.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.24.2e-09358379122
                       G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                                   kpr++W+ eLH++Fv av+qLG
  Zjn_sc00004.1.g01860.1.am.mk 358 KPRVVWSVELHRKFVAAVNQLG 379
                                   79*******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.8E-4244276No hitNo description
Gene3DG3DSA:1.10.10.601.0E-8356382IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MFHIFLPPWP WSHDTGSTTA APASPPRLAS EQSTLAFVFQ PVIKWNSQNL QLPLEACGAR  60
APPGPPRRLP SPSPSRLLPS FLPSFLSFLE DLDHPPLRSS NHLELSPSAA VAAAVGAVLV  120
PLCVLSYELR GAFACVLGHL DPRFLPFTCL LLSPPPARLG NGGGAVGSFL ILEASLSPVD  180
KSTRLFFFSS TSRCASRGRF GFAQLRVKFL ACGSIDWDSE IGMLLGAATA RMEEKNGRVS  240
DRERDQFPVG MQVLAVDDDP VCLKVLETLL RRCQYHELRN IWQHVVRRKF SSREHKNLDM  300
YKEPPTADSC HGQSQIVSRA SDQSGRLSKK RKELHSEEED DVDETDFQEG DEPSAAKKPR  360
VVWSVELHRK FVAAVNQLGI DSNDS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736242e-32AK073624.1 Oryza sativa Japonica Group cDNA clone:J033048G07, full insert sequence.
GenBankAK1011652e-32AK101165.1 Oryza sativa Japonica Group cDNA clone:J033028D10, full insert sequence.
GenBankAK1029592e-32AK102959.1 Oryza sativa Japonica Group cDNA clone:J033115H14, full insert sequence.
GenBankAP0072262e-32AP007226.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBb0036B04.
GenBankAP0149622e-32AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126142e-32CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6140822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-17response regulator 2